Data related to "Upper cortical layer-driven network impairment in schizophrenia" paper, by Batiuk, Tyler et al.

This is Data for "Upper cortical layer-driven network impairment in schizophrenia" paper, by Batiuk, Tyler et al., 2022 This repository contains: Supplementary Dataset Tables 1-4 (Supplementary_Dataset_Tables_1-4.xlsx). They contain DE genes and GO terms from snRNA-seq and visium analysis. Single nuclei and Visium spatial transcriptomics sequencing data (snRNA-seq_and_spatial_transcriptomics.zip) containing raw count matrices of snRNA-seq samples; Conos object with aligned snRNA-seq samples; snRNA-seq single nuclei cell subtype annotations; raw count matrices of Visium spatial transcriptomics samples; Visium spatial transcriptomics manual histological cortical layer annotations; and 10x Genomics spaceranger count pipeline output for Visium spatial transcriptomics data. Histological images of H&E stained Visium spatial transcriptomics samples mounted on visium slide capture area (visium_sample_images.zip)