Additional file 1 of Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Additional file 1: Table S1. Sample metadata and analyses where used. Table S2. Samples with high F2 allele sharing with wolves. Table S3. Variation yet to be discovered based on 100 samples per breed. Table S4. Breed group placement of each sample. Table S5. Runs of homozygosity (ROH) statistics per sample. Table S6. Publicly available test samples used to measure imputation accuracy. Table S7. Copy number variable genes. Table S8. Potential retrogenes. Table S9. Candidate genes either overlapping or within a 100kb distance of a significant site for each targeted ancestry. Table S10. iSAFE top 10 sites per selection signature and ancestry component. Table S11. Observed fraction of theoretically possible SNVs. Table S12. Alignment and filtering strategies for three panels of normal variation. Table S13. Breed categories included in three panels of normal variation. Table S14. Summary of variant counts in Dog10K sample sets. Table S15. Distribution of SNVs across functional classes and Dog10K sample sets. Table S16. Genotypes observed for 76 OMIA variants. Table S17. Allele frequency distributions detected in Dog10K for OMIA categories. Table S18. Variant positions deviating from HWE. Table S19. Animal protocols, approving board, and date of approval. Table S20. Summary of duplicate genes within NCBI release 106. Table S21. Samples used in Ohana selection analysis.