A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices

  • Frederik Filip Vinggaard Stæger (Creator)
  • Kristian Mortensen (Creator)
  • Malthe Skytte Nordentoft Nielsen (Creator)
  • Hajime Hirase (Creator)
  • Louis Kaufmann (Creator)
  • Maiken Nedergaard (Creator)
  • German Neuroinformatics Node (Contributor)

    Dataset

    Description

    The full data set and pipeline for constructing the three-dimensional, population-based average of the C57BL/6 mouse brain form DAPI-stained coronal slices. This repository also contains a python implementation of automatic coronal brain slice segmentation. The data set constitutes of all the raw slice images (.tif) in full resolution, the pre-processed version (.nii), the individually reconstructed brain volumes, and the final population-based average.
    Date made available2020
    PublisherG-Node

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