@article{0d9ed710f75411ddbf70000ea68e967b,
title = "TreeFam: 2008 Update",
abstract = "TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of TreeFam contains curated trees for 1314 families and automatically generated trees for another 14,351 families. We have expanded TreeFam to include 25 fully sequenced animal genomes, as well as four genomes from plant and fungal outgroup species. We have also introduced more accurate approaches for automatically grouping genes into families, for building phylogenetic trees, and for inferring orthologues and paralogues. The user interface for viewing phylogenetic trees and family information has been improved. Furthermore, a new perl API lets users easily extract data from the TreeFam mysql database.",
author = "Jue Ruan and Heng Li and Zhongzhong Chen and Avril Coghlan and Coin, {Lachlan James M} and Yiran Guo and Jean-Karim H{\'e}rich{\'e} and Yafeng Hu and Karsten Kristiansen and Ruiqiang Li and Tao Liu and Alan Moses and Junjie Qin and S{\o}ren Vang and Vilella, {Albert J} and Abel Ureta-Vidal and Lars Bolund and Jun Wang and Richard Durbin",
year = "2008",
doi = "10.1093/nar/gkm1005",
language = "English",
volume = "36",
pages = "D735--D740",
journal = "Nucleic acids symposium series",
issn = "0261-3166",
publisher = "Oxford University Press",
number = "Database issue",
}