The UCSC Genome Browser Database: 2008 update.

D Karolchik; R M Kuhn; R Baertsch; G P Barber; H Clawson; M Diekhans; B Giardine; R A Harte; A S Hinrichs; F Hsu; K M Kober; W Miller; Jakob Skou Pedersen; A Pohl; B J Raney; B Rhead; K R Rosenbloom; K E Smith; M Stanke; A Thakkapallayil; H Trumbower; T Wang; A S Zweig; D Haussler; W J Kent

doi:10.1093/nar/gkm966

The UCSC Genome Browser Database: 2008 update.

D Karolchik, R M Kuhn, R Baertsch, G P Barber, H Clawson, M Diekhans, B Giardine, R A Harte, A S Hinrichs, F Hsu, K M Kober, W Miller, Jakob Skou Pedersen, A Pohl, B J Raney, B Rhead, K R Rosenbloom, K E Smith, M Stanke, A ThakkapallayilH Trumbower, T Wang, A S Zweig, D Haussler, W J Kent

Functional genomics

410 Citationer (Scopus)

Abstract

Udgivelsesdato: 2008-Jan

Originalsprog	Engelsk
Tidsskrift	Nucleic Acids Research
Vol/bind	36
Udgave nummer	Database issue
Sider (fra-til)	D773-9
ISSN	0305-1048
DOI	https://doi.org/10.1093/nar/gkm966
Status	Udgivet - 2007

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Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., ... Kent, W. J. (2007). The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research, 36(Database issue), D773-9. https://doi.org/10.1093/nar/gkm966

Karolchik, D, Kuhn, RM, Baertsch, R, Barber, GP, Clawson, H, Diekhans, M, Giardine, B, Harte, RA, Hinrichs, AS, Hsu, F, Kober, KM, Miller, W, Pedersen, JS, Pohl, A, Raney, BJ, Rhead, B, Rosenbloom, KR, Smith, KE, Stanke, M, Thakkapallayil, A, Trumbower, H, Wang, T, Zweig, AS, Haussler, D & Kent, WJ 2007, 'The UCSC Genome Browser Database: 2008 update.', Nucleic Acids Research, bind 36, nr. Database issue, s. D773-9. https://doi.org/10.1093/nar/gkm966

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title = "The UCSC Genome Browser Database: 2008 update.",

abstract = "The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.",

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author = "D Karolchik and Kuhn, {R M} and R Baertsch and Barber, {G P} and H Clawson and M Diekhans and B Giardine and Harte, {R A} and Hinrichs, {A S} and F Hsu and Kober, {K M} and W Miller and Pedersen, {Jakob Skou} and A Pohl and Raney, {B J} and B Rhead and Rosenbloom, {K R} and Smith, {K E} and M Stanke and A Thakkapallayil and H Trumbower and T Wang and Zweig, {A S} and D Haussler and Kent, {W J}",

year = "2007",

doi = "10.1093/nar/gkm966",

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AU - Karolchik, D

AU - Kuhn, R M

AU - Baertsch, R

AU - Barber, G P

AU - Clawson, H

AU - Diekhans, M

AU - Giardine, B

AU - Harte, R A

AU - Hinrichs, A S

AU - Hsu, F

AU - Kober, K M

AU - Miller, W

AU - Pedersen, Jakob Skou

AU - Pohl, A

AU - Raney, B J

AU - Rhead, B

AU - Rosenbloom, K R

AU - Smith, K E

AU - Stanke, M

AU - Thakkapallayil, A

AU - Trumbower, H

AU - Wang, T

AU - Zweig, A S

AU - Haussler, D

AU - Kent, W J

PY - 2007

Y1 - 2007

N2 - The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.

AB - The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.

KW - Faculty of Science

KW - Animals

KW - Computer Graphics

KW - Databases

KW - Nucleic Acid

KW - Genomics

KW - Humans

KW - Internet

KW - Invertebrates

KW - Sequence Alignment

KW - User-Computer Interface

KW - Variation (Genetics)

KW - Vertebrates

U2 - 10.1093/nar/gkm966

DO - 10.1093/nar/gkm966

M3 - Journal article

C2 - 18086701

SN - 0305-1048

VL - 36

SP - D773-9

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - Database issue

ER -

The UCSC Genome Browser Database: 2008 update.

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