The Global Genome Biodiversity Network (GGBN) Data Standard specification

Gabriele Droege; Katie Barker; Ole Seberg; Jonathan Coddington; E. Benson; Walter G. Berendsohn; B.  Bunk; Carol Butler; E. M. Cawsey; J.  Deck; M. Döring; P. Flemons; Birgit Gemeinholzer; A. Güntsch; T. Hollowell; P. Kelbert; I. Kostadinov; R. Kottmann; R. T. Lawlor; C. Lyal; Jacqueline MacKenzie-Dodds; C. Meyer; D. Mulcahy; S. Y. Nussbeck; É. O'Tuama; T. Orrell; Gitte Petersen; T. Robertson; C. Söhngren; J. Whitacre; J. Wieczorek; P. Yilmaz; H. Zetzsche; Y.  Zhang; X. Zhou

doi:10.1093/database/baw125

The Global Genome Biodiversity Network (GGBN) Data Standard specification

Gabriele Droege, Katie Barker, Ole Seberg, Jonathan Coddington, E. Benson, Walter G. Berendsohn, B. Bunk, Carol Butler, E. M. Cawsey, J. Deck, M. Döring, P. Flemons, Birgit Gemeinholzer, A. Güntsch, T. Hollowell, P. Kelbert, I. Kostadinov, R. Kottmann, R. T. Lawlor, C. LyalJacqueline MacKenzie-Dodds, C. Meyer, D. Mulcahy, S. Y. Nussbeck, É. O'Tuama, T. Orrell, Gitte Petersen, T. Robertson, C. Söhngren, J. Whitacre, J. Wieczorek, P. Yilmaz, H. Zetzsche, Y. Zhang, X. Zhou

13 Citationer (Scopus)

59 Downloads (Pure)

Abstract

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of gen-omic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.

Originalsprog	Engelsk
Artikelnummer	baw125
Tidsskrift	Database: The Journal of Biological Databases and Curation
Vol/bind	2016
Antal sider	11
ISSN	1758-0463
DOI	https://doi.org/10.1093/database/baw125
Status	Udgivet - 2016

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10.1093/database/baw125Licens: CC BY

Droege_2016_The_Gobal_GenomeForlagets udgivne version, 609 KBLicens: CC BY

Global Genome Biodiversity Network (Ekstern organisation)
Seberg, O. (Formand)
jun. 2016 → …
Aktivitet: Medlemsskab - typer › Medlemskab af udvalg, råd og nævn

Citationsformater

Droege, G., Barker, K., Seberg, O., Coddington, J., Benson, E., Berendsohn, W. G., Bunk, B., Butler, C., Cawsey, E. M., Deck, J., Döring, M., Flemons, P., Gemeinholzer, B., Güntsch, A., Hollowell, T., Kelbert, P., Kostadinov, I., Kottmann, R., Lawlor, R. T., ... Zhou, X. (2016). The Global Genome Biodiversity Network (GGBN) Data Standard specification. Database: The Journal of Biological Databases and Curation, 2016, Artikel baw125. https://doi.org/10.1093/database/baw125

Droege, G, Barker, K, Seberg, O, Coddington, J, Benson, E, Berendsohn, WG, Bunk, B, Butler, C, Cawsey, EM, Deck, J, Döring, M, Flemons, P, Gemeinholzer, B, Güntsch, A, Hollowell, T, Kelbert, P, Kostadinov, I, Kottmann, R, Lawlor, RT, Lyal, C, MacKenzie-Dodds, J, Meyer, C, Mulcahy, D, Nussbeck, SY, O'Tuama, É, Orrell, T, Petersen, G, Robertson, T, Söhngren, C, Whitacre, J, Wieczorek, J, Yilmaz, P, Zetzsche, H, Zhang, Y & Zhou, X 2016, 'The Global Genome Biodiversity Network (GGBN) Data Standard specification', Database: The Journal of Biological Databases and Curation, bind 2016, baw125. https://doi.org/10.1093/database/baw125

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abstract = "Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of gen-omic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.",

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AU - Droege, Gabriele

AU - Barker, Katie

AU - Seberg, Ole

AU - Coddington, Jonathan

AU - Benson, E.

AU - Berendsohn, Walter G.

AU - Bunk, B.

AU - Butler, Carol

AU - Cawsey, E. M.

AU - Deck, J.

AU - Döring, M.

AU - Flemons, P.

AU - Gemeinholzer, Birgit

AU - Güntsch, A.

AU - Hollowell, T.

AU - Kelbert, P.

AU - Kostadinov, I.

AU - Kottmann, R.

AU - Lawlor, R. T.

AU - Lyal, C.

AU - MacKenzie-Dodds, Jacqueline

AU - Meyer, C.

AU - Mulcahy, D.

AU - Nussbeck, S. Y.

AU - O'Tuama, É.

AU - Orrell, T.

AU - Petersen, Gitte

AU - Robertson, T.

AU - Söhngren, C.

AU - Whitacre, J.

AU - Wieczorek, J.

AU - Yilmaz, P.

AU - Zetzsche, H.

AU - Zhang, Y.

AU - Zhou, X.

PY - 2016

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N2 - Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of gen-omic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.

AB - Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of gen-omic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.

U2 - 10.1093/database/baw125

DO - 10.1093/database/baw125

M3 - Journal article

C2 - 27694206

SN - 1758-0463

VL - 2016

JO - Database: The Journal of Biological Databases and Curation

JF - Database: The Journal of Biological Databases and Curation

M1 - baw125

ER -

The Global Genome Biodiversity Network (GGBN) Data Standard specification

Abstract

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Fingeraftryk

Aktiviteter

Global Genome Biodiversity Network (Ekstern organisation)

Citationsformater