Systemic analysis of soil microbiome deciphers anthropogenic influence on soil ecology and ecosystem functioning

TY - JOUR

T1 - Systemic analysis of soil microbiome deciphers anthropogenic influence on soil ecology and ecosystem functioning

AU - Gupta, Shashank

AU - Kumar, M.

AU - Kumar, J.

AU - Ahmad, V.

AU - Pandey, R.

AU - Chauhan, N. S.

PY - 2017/10/1

Y1 - 2017/10/1

N2 - Soil is a complex ecosystem with defined microbial community signatures, modulated by the interaction between biotic and abiotic factors. Amidst biotic factors, land usage have significant impact onto the soil microbial structure and ecosystem functioning. In the current study, metagenomic approach was used to decipher effect of hospital settings on soil microbiome structure and physiological functions. Physico-chemical properties analysis revealed that key elements for maintenance of soil microflora, such as organic carbon, nitrogen, phosphorus and sulfur were relatively diminished within hospital soil, compared to garden soil. Comparative microbial diversity analysis with 97,315 SSU rRNA gene sequences generated from both the soil samples highlight relatively low microbial diversity, with an enrichment for Acidobacteria and Bacteroidetes and decreased Proteobacteria/Acidobacteria ratio. Comparative shotgun metagenome sequence analysis further revealed a shift in the physiological role of soil microbiomes with change in soil usage. Genes for carbohydrate, sulfur, potassium and nitrogen metabolism were significantly (q value <0.05) higher in the garden soil; while the genes for phage, plasmid DNA, transposon and aromatic compound metabolism were significantly enriched within hospital soil. Thus, the current study highlights a correlation between soil biochemistry and microbial ecology based on land usage.

AB - Soil is a complex ecosystem with defined microbial community signatures, modulated by the interaction between biotic and abiotic factors. Amidst biotic factors, land usage have significant impact onto the soil microbial structure and ecosystem functioning. In the current study, metagenomic approach was used to decipher effect of hospital settings on soil microbiome structure and physiological functions. Physico-chemical properties analysis revealed that key elements for maintenance of soil microflora, such as organic carbon, nitrogen, phosphorus and sulfur were relatively diminished within hospital soil, compared to garden soil. Comparative microbial diversity analysis with 97,315 SSU rRNA gene sequences generated from both the soil samples highlight relatively low microbial diversity, with an enrichment for Acidobacteria and Bacteroidetes and decreased Proteobacteria/Acidobacteria ratio. Comparative shotgun metagenome sequence analysis further revealed a shift in the physiological role of soil microbiomes with change in soil usage. Genes for carbohydrate, sulfur, potassium and nitrogen metabolism were significantly (q value <0.05) higher in the garden soil; while the genes for phage, plasmid DNA, transposon and aromatic compound metabolism were significantly enriched within hospital soil. Thus, the current study highlights a correlation between soil biochemistry and microbial ecology based on land usage.

U2 - 10.1007/s13762-017-1301-7

DO - 10.1007/s13762-017-1301-7

M3 - Journal article

SN - 1735-1472

VL - 14

SP - 2229

EP - 2238

JO - International Journal of Environmental Science and Technology

JF - International Journal of Environmental Science and Technology

IS - 10

ER -