Quantitative proteome profiling of normal human circulating microparticles

TY - JOUR

T1 - Quantitative proteome profiling of normal human circulating microparticles

AU - Østergaard, Ole

AU - Nielsen, Christoffer T

AU - Iversen, Line V

AU - Jacobsen, Søren

AU - Tanassi, Julia T

AU - Heegaard, Niels H H

PY - 2012/4/6

Y1 - 2012/4/6

N2 - Circulating microparticles (MPs) are produced as part of normal physiology. Their numbers, origin, and composition change in pathology. Despite this, the normal MP proteome has not yet been characterized with standardized high-resolution methods. We here quantitatively profile the normal MP proteome using nano-LC-MS/MS on an LTQ-Orbitrap with optimized sample collection, preparation, and analysis of 12 different normal samples. Analytical and procedural variation were estimated in triply processed samples analyzed in triplicate from two different donors. Label-free quantitation was validated by the correlation of cytoskeletal protein intensities with MP numbers obtained by flow cytometry. Finally, the validity of using pooled samples was evaluated using overlap protein identification numbers and multivariate data analysis. Using conservative parameters, 536 different unique proteins were quantitated. Of these, 334 (63%) were present in all samples and represent an MP core proteome. Technical triplicates showed

AB - Circulating microparticles (MPs) are produced as part of normal physiology. Their numbers, origin, and composition change in pathology. Despite this, the normal MP proteome has not yet been characterized with standardized high-resolution methods. We here quantitatively profile the normal MP proteome using nano-LC-MS/MS on an LTQ-Orbitrap with optimized sample collection, preparation, and analysis of 12 different normal samples. Analytical and procedural variation were estimated in triply processed samples analyzed in triplicate from two different donors. Label-free quantitation was validated by the correlation of cytoskeletal protein intensities with MP numbers obtained by flow cytometry. Finally, the validity of using pooled samples was evaluated using overlap protein identification numbers and multivariate data analysis. Using conservative parameters, 536 different unique proteins were quantitated. Of these, 334 (63%) were present in all samples and represent an MP core proteome. Technical triplicates showed

U2 - 10.1021/pr200901p

DO - 10.1021/pr200901p

M3 - Journal article

C2 - 22329422

SN - 1535-3893

VL - 11

SP - 2154

EP - 2163

JO - Journal of Proteome Research

JF - Journal of Proteome Research

IS - 4

ER -