Protein engineering approaches in the post-genomic era

TY - JOUR

T1 - Protein engineering approaches in the post-genomic era

AU - Singh, Raushan K.

AU - Lee, Jung Kul

AU - Selvaraj, Chandrabose

AU - Singh, Ranjitha

AU - Li, Jinglin

AU - Kim, Sang Yong

AU - Kalia, Vipin C.

PY - 2018/1/1

Y1 - 2018/1/1

N2 - Proteins are one of the most multifaceted macromolecules in living systems. Proteins have evolved to function under physiological conditions and, therefore, are not usually tolerant of harsh experimental and environmental conditions. The growing use of proteins in industrial processes as a greener alternative to chemical catalysts often demands constant innovation to improve their performance. Protein engineering aims to design new proteins or modify the sequence of a protein to create proteins with new or desirable functions. With the emergence of structural and functional genomics, protein engineering has been invigorated in the post-genomic era. The three-dimensional structures of proteins with known functions facilitate protein engineering approaches to design variants with desired properties. There are three major approaches of protein engineering research, namely, directed evolution, rational design, and de novo design. Rational design is an effective method of protein engineering when the threedimensional structure and mechanism of the protein is well known. In contrast, directed evolution does not require extensive information and a three-dimensional structure of the protein of interest. Instead, it involves random mutagenesis and selection to screen enzymes with desired properties. De novo design uses computational protein design algorithms to tailor synthetic proteins by using the three-dimensional structures of natural proteins and their folding rules. The present review highlights and summarizes recent protein engineering approaches, and their challenges and limitations in the post-genomic era.

AB - Proteins are one of the most multifaceted macromolecules in living systems. Proteins have evolved to function under physiological conditions and, therefore, are not usually tolerant of harsh experimental and environmental conditions. The growing use of proteins in industrial processes as a greener alternative to chemical catalysts often demands constant innovation to improve their performance. Protein engineering aims to design new proteins or modify the sequence of a protein to create proteins with new or desirable functions. With the emergence of structural and functional genomics, protein engineering has been invigorated in the post-genomic era. The three-dimensional structures of proteins with known functions facilitate protein engineering approaches to design variants with desired properties. There are three major approaches of protein engineering research, namely, directed evolution, rational design, and de novo design. Rational design is an effective method of protein engineering when the threedimensional structure and mechanism of the protein is well known. In contrast, directed evolution does not require extensive information and a three-dimensional structure of the protein of interest. Instead, it involves random mutagenesis and selection to screen enzymes with desired properties. De novo design uses computational protein design algorithms to tailor synthetic proteins by using the three-dimensional structures of natural proteins and their folding rules. The present review highlights and summarizes recent protein engineering approaches, and their challenges and limitations in the post-genomic era.

KW - De novo design

KW - Directed evolution

KW - Genomics

KW - Protein engineering

KW - Random mutagenesis

KW - Rational design

UR - http://www.scopus.com/inward/record.url?scp=85039783514&partnerID=8YFLogxK

U2 - 10.2174/1369203716646161117114243

DO - 10.2174/1369203716646161117114243

M3 - Review

C2 - 27855603

AN - SCOPUS:85039783514

SN - 1389-2037

VL - 19

SP - 5

EP - 15

JO - Current Protein and Peptide Science

JF - Current Protein and Peptide Science

IS - 1

ER -