Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

Peter Karlskov-Mortensen; Z.L. Hu; Jan Gorodkin; J.M. Reecy; Merete Fredholm

doi:10.1111/j.1365-2052.2007.01609.x

Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

Peter Karlskov-Mortensen, Z.L. Hu, Jan Gorodkin, J.M. Reecy, Merete Fredholm

10 Citationer (Scopus)

Abstract

A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10^-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.

Originalsprog	Engelsk
Tidsskrift	Animal Genetics
Vol/bind	38
Udgave nummer	4
Sider (fra-til)	401-405
Antal sider	5
ISSN	0268-9146
DOI	https://doi.org/10.1111/j.1365-2052.2007.01609.x
Status	Udgivet - 2007

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10.1111/j.1365-2052.2007.01609.x

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title = "Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences",

abstract = "A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.",

keywords = "Former LIFE faculty, comparative map, genetic marker, linkage map, microsatellite, pig, positional quantitative trait loci mining",

author = "Peter Karlskov-Mortensen and Z.L. Hu and Jan Gorodkin and J.M. Reecy and Merete Fredholm",

year = "2007",

doi = "10.1111/j.1365-2052.2007.01609.x",

language = "English",

volume = "38",

pages = "401--405",

journal = "Animal Genetics",

issn = "0268-9146",

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TY - JOUR

T1 - Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

AU - Karlskov-Mortensen, Peter

AU - Hu, Z.L.

AU - Gorodkin, Jan

AU - Reecy, J.M.

AU - Fredholm, Merete

PY - 2007

Y1 - 2007

N2 - A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.

AB - A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.

KW - Former LIFE faculty

KW - comparative map

KW - genetic marker

KW - linkage map

KW - microsatellite

KW - pig

KW - positional quantitative trait loci mining

U2 - 10.1111/j.1365-2052.2007.01609.x

DO - 10.1111/j.1365-2052.2007.01609.x

M3 - Journal article

C2 - 17559553

SN - 0268-9146

VL - 38

SP - 401

EP - 405

JO - Animal Genetics

JF - Animal Genetics

IS - 4

ER -

Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

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