Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

Samuel M. Luedin; Joël F. Pothier; Francesco Danza; Nicola Storelli; Niels-Ulrik Frigaard; Matthias Wittwer; Mauro Tonolla

doi:10.1186/s40793-018-0317-z

Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16^T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

Samuel M. Luedin, Joël F. Pothier, Francesco Danza, Nicola Storelli, Niels-Ulrik Frigaard, Matthias Wittwer, Mauro Tonolla^*

^*Corresponding author af dette arbejde

Marine Biological Section

2 Citationer (Scopus)

51 Downloads (Pure)

Abstract

"Thiodictyon syntrophicum" sp. nov. strain Cad16^T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16^T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16^T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16^T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232^T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16^T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

Originalsprog	Engelsk
Artikelnummer	14
Tidsskrift	Standards in Genomic Sciences
Vol/bind	13
ISSN	1944-3277
DOI	https://doi.org/10.1186/s40793-018-0317-z
Status	Udgivet - 9 maj 2018

Adgang til dokumentet

10.1186/s40793-018-0317-zLicens: CC BY

document(1)Forlagets udgivne version, 2,54 MBLicens: CC BY

Andre filer og links

Link to publication in Scopus

Citationsformater

Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, N.-U., Wittwer, M., & Tonolla, M. (2018). Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16^T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences, 13, Artikel 14. https://doi.org/10.1186/s40793-018-0317-z

Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16^T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. / Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco et al.
I: Standards in Genomic Sciences, Bind 13, 14, 09.05.2018.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

@article{3e9d61af636a42c098bd484f6711d4f7,

title = "Complete genome sequence of {"}Thiodictyon syntrophicum{"} sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno",

abstract = "{"}Thiodictyon syntrophicum{"} sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.",

keywords = "Chromatiaceae, CRISPR, Meromictic lake, Okenone, Phototrophic sulfur bacteria, Sulfur cycling",

author = "Luedin, {Samuel M.} and Pothier, {Jo{\"e}l F.} and Francesco Danza and Nicola Storelli and Niels-Ulrik Frigaard and Matthias Wittwer and Mauro Tonolla",

year = "2018",

month = may,

day = "9",

doi = "10.1186/s40793-018-0317-z",

language = "English",

volume = "13",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "BioMed Central Ltd.",

}

TY - JOUR

T1 - Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

AU - Luedin, Samuel M.

AU - Pothier, Joël F.

AU - Danza, Francesco

AU - Storelli, Nicola

AU - Frigaard, Niels-Ulrik

AU - Wittwer, Matthias

AU - Tonolla, Mauro

PY - 2018/5/9

Y1 - 2018/5/9

N2 - "Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

AB - "Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

KW - Chromatiaceae

KW - CRISPR

KW - Meromictic lake

KW - Okenone

KW - Phototrophic sulfur bacteria

KW - Sulfur cycling

UR - http://www.scopus.com/inward/record.url?scp=85046699077&partnerID=8YFLogxK

U2 - 10.1186/s40793-018-0317-z

DO - 10.1186/s40793-018-0317-z

M3 - Journal article

C2 - 29774086

AN - SCOPUS:85046699077

SN - 1944-3277

VL - 13

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

M1 - 14

ER -