Data for: Bimolecular Sandwich Aggregates of Porphyrin Nanorings

  • Henrik Gotfredsen (University of Copenhagen) (Ophavsmand)
  • Janko Hergenhahn (Ophavsmand)
  • Fernanda Duarte (Ophavsmand)
  • Tim Claridge (Ophavsmand)
  • Harry Anderson (Ophavsmand)

Data set

Beskrivelse

Supporting data files for "Bimolecular Sandwich Aggregates of Porphyrin Nanorings” (a) PALES_structures. Files for analyzing RDCs: input text file (1 txt file), input geometries (61 pdb files) and output (61 txt files). (b) XTB_optimized_structures. Geometries of bimolecular aggregates of c-P8 and c-P12 with different substituents (4 xyz files). (c) TS_trajectory_structures. Calculated geometries along the transition state trajectory for intramolecular rotation of the (c-P12_t-Bu)2 aggregate (9 xyz files). (d) Planarization_calculations. DFT calculated geometries of c-P6, c-P8, c-P10, c-P12 and c-P14 when 2D planar (optimized in xy-plane) or 3D cylindrical (10 xyz files). (e) Molecular_Dynamics_GROMACS_input_files. Molecular dynamics input files for (c-P8_OOct)2 and (c-P12_tBu)2 (2x gro+top+itp+4xmdp). (f) cP12_tBu_2_structure. Idealized structure for the (c-P12_t-Bu)2 aggregate as shown in Figure 3 of the manuscript (1 xyz file).
Dato for tilgængelighed8 jul. 2024
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