SmashCommunity: A metagenomic annotation and analysis tool.

TY - JOUR

T1 - SmashCommunity: A metagenomic annotation and analysis tool.

AU - Arumugam, Manimozhiyan

AU - Harrington, Eoghan D

AU - Foerstner, Konrad U

AU - Raes, Jeroen

AU - Bork, Peer

PY - 2010/12

Y1 - 2010/12

N2 - Summary: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.

AB - Summary: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.

U2 - 10.1093/bioinformatics/btq536

DO - 10.1093/bioinformatics/btq536

M3 - Journal article

C2 - 20959381

SN - 1367-4803

VL - 26

SP - 2977

EP - 2978

JO - Bioinformatics

JF - Bioinformatics

IS - 23

ER -