Simplified models of biological networks

Kim Sneppen, Sandeep Krishna, Szabolcs Semsey

66 Citations (Scopus)

Abstract

The function of living cells is controlled by complex regulatory networks that are built of a wide diversity of interacting molecular components. The sheer size and intricacy of molecular networks of even the simplest organisms are obstacles toward understanding network functionality. This review discusses the achievements and promise of a bottom-up approach that uses well-characterized subnetworks as model systems for understanding larger networks. It highlights the interplay between the structure, logic, and function of various types of small regulatory circuits. The bottom-up approach advocates understanding regulatory networks as a collection of entangled motifs. We therefore emphasize the potential of negative and positive feedback, as well as their combinations, to generate robust homeostasis, epigenetics, and oscillations.

Original languageEnglish
JournalAnnual Review of Biophysics and Biomolecular Structure
Volume9
Issue number39
Pages (from-to)43-59
Number of pages16
ISSN1056-8700
DOIs
Publication statusPublished - 9 Jun 2010

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