Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing

T A Quinn; S Granite; M A Allessie; C Antzelevitch; C Bollensdorff; G Bub; R A B Burton; E Cerbai; P S Chen; M Delmar; D Difrancesco; Y E Earm; I R Efimov; M Egger; E Entcheva; M Fink; R Fischmeister; M R Franz; A Garny; W R Giles; T Hannes; S E Harding; P J Hunter; G Iribe; J Jalife; C R Johnson; R S Kass; I Kodama; G Koren; P Lord; V S Markhasin; S Matsuoka; A D McCulloch; G R Mirams; G E Morley; S Nattel; D Noble; Søren-Peter Olesen; A V Panfilov; N A Trayanova; U Ravens; S Richard; D S Rosenbaum; Y Rudy; F Sachs; F B Sachse; D A Saint; U Schotten; O Solovyova; P Taggart; L Tung; A Varró; P G Volders; K Wang; J N Weiss; E Wettwer; E White; R Wilders; R L Winslow; P Kohl

doi:10.1016/j.pbiomolbio.2011.07.001

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing

T A Quinn, S Granite, M A Allessie, C Antzelevitch, C Bollensdorff, G Bub, R A B Burton, E Cerbai, P S Chen, M Delmar, D Difrancesco, Y E Earm, I R Efimov, M Egger, E Entcheva, M Fink, R Fischmeister, M R Franz, A Garny, W R GilesT Hannes, S E Harding, P J Hunter, G Iribe, J Jalife, C R Johnson, R S Kass, I Kodama, G Koren, P Lord, V S Markhasin, S Matsuoka, A D McCulloch, G R Mirams, G E Morley, S Nattel, D Noble, Søren-Peter Olesen, A V Panfilov, N A Trayanova, U Ravens, S Richard, D S Rosenbaum, Y Rudy, F Sachs, F B Sachse, D A Saint, U Schotten, O Solovyova, P Taggart, L Tung, A Varró, P G Volders, K Wang, J N Weiss, E Wettwer, E White, R Wilders, R L Winslow, P Kohl

Physiology of circulation, kidney and lung

41 Citations (Scopus)

Abstract

Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

Original language	English
Journal	Progress in Biophysics & Molecular Biology
Volume	107
Issue number	1
Pages (from-to)	4-10
Number of pages	7
ISSN	0079-6107
DOIs	https://doi.org/10.1016/j.pbiomolbio.2011.07.001
Publication status	Published - Oct 2011

Keywords

Animals
Electrophysiological Processes
Heart
Humans
Information Dissemination
Models, Biological
Reference Standards
Reproducibility of Results
Research Design

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10.1016/j.pbiomolbio.2011.07.001

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Quinn, T. A., Granite, S., Allessie, M. A., Antzelevitch, C., Bollensdorff, C., Bub, G., Burton, R. A. B., Cerbai, E., Chen, P. S., Delmar, M., Difrancesco, D., Earm, Y. E., Efimov, I. R., Egger, M., Entcheva, E., Fink, M., Fischmeister, R., Franz, M. R., Garny, A., ... Kohl, P. (2011). Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics & Molecular Biology, 107(1), 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE) : standardised reporting for model reproducibility, interoperability, and data sharing. / Quinn, T A; Granite, S; Allessie, M A et al.

In: Progress in Biophysics & Molecular Biology, Vol. 107, No. 1, 10.2011, p. 4-10.

Research output: Contribution to journal › Journal article › Research › peer-review

Quinn, TA, Granite, S, Allessie, MA, Antzelevitch, C, Bollensdorff, C, Bub, G, Burton, RAB, Cerbai, E, Chen, PS, Delmar, M, Difrancesco, D, Earm, YE, Efimov, IR, Egger, M, Entcheva, E, Fink, M, Fischmeister, R, Franz, MR, Garny, A, Giles, WR, Hannes, T, Harding, SE, Hunter, PJ, Iribe, G, Jalife, J, Johnson, CR, Kass, RS, Kodama, I, Koren, G, Lord, P, Markhasin, VS, Matsuoka, S, McCulloch, AD, Mirams, GR, Morley, GE, Nattel, S, Noble, D, Olesen, S-P, Panfilov, AV, Trayanova, NA, Ravens, U, Richard, S, Rosenbaum, DS, Rudy, Y, Sachs, F, Sachse, FB, Saint, DA, Schotten, U, Solovyova, O, Taggart, P, Tung, L, Varró, A, Volders, PG, Wang, K, Weiss, JN, Wettwer, E, White, E, Wilders, R, Winslow, RL & Kohl, P 2011, 'Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing', Progress in Biophysics & Molecular Biology, vol. 107, no. 1, pp. 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

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abstract = "Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.",

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AU - Granite, S

AU - Allessie, M A

AU - Antzelevitch, C

AU - Bollensdorff, C

AU - Bub, G

AU - Burton, R A B

AU - Cerbai, E

AU - Chen, P S

AU - Delmar, M

AU - Difrancesco, D

AU - Earm, Y E

AU - Efimov, I R

AU - Egger, M

AU - Entcheva, E

AU - Fink, M

AU - Fischmeister, R

AU - Franz, M R

AU - Garny, A

AU - Giles, W R

AU - Hannes, T

AU - Harding, S E

AU - Hunter, P J

AU - Iribe, G

AU - Jalife, J

AU - Johnson, C R

AU - Kass, R S

AU - Kodama, I

AU - Koren, G

AU - Lord, P

AU - Markhasin, V S

AU - Matsuoka, S

AU - McCulloch, A D

AU - Mirams, G R

AU - Morley, G E

AU - Nattel, S

AU - Noble, D

AU - Olesen, Søren-Peter

AU - Panfilov, A V

AU - Trayanova, N A

AU - Ravens, U

AU - Richard, S

AU - Rosenbaum, D S

AU - Rudy, Y

AU - Sachs, F

AU - Sachse, F B

AU - Saint, D A

AU - Schotten, U

AU - Solovyova, O

AU - Taggart, P

AU - Tung, L

AU - Varró, A

AU - Volders, P G

AU - Wang, K

AU - Weiss, J N

AU - Wettwer, E

AU - White, E

AU - Wilders, R

AU - Winslow, R L

AU - Kohl, P

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KW - Electrophysiological Processes

KW - Heart

KW - Humans

KW - Information Dissemination

KW - Models, Biological

KW - Reference Standards

KW - Reproducibility of Results

KW - Research Design

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DO - 10.1016/j.pbiomolbio.2011.07.001

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SN - 0079-6107

VL - 107

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JO - Progress in Biophysics and Molecular Biology

JF - Progress in Biophysics and Molecular Biology

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ER -

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing

Abstract

Keywords

Access to Document

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