Kim Sneppen

Research output

Research output per year 1991 2002 2004 2005 2006 2007 2008 2009 2010 2011 2012 2016 2019

• 168 Journal article
• 4 Conference article
• 3 Book
• 1 Report
• 3 More
  • 1 Book chapter
  • 1 Comment/debate
  • 1 Review

Research output per year

Research output per year

Search results

• 2008

  Dynamical genetic regulation

  Jensen, M. H., Krishna, S., Sneppen, K. & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

  Research output: Book/Report › Book › Research › peer-review

• Gene duplication models for directed networks with limits on growth

  Enemark, J. & Sneppen, K., 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

  Research output: Contribution to journal › Journal article › Research › peer-review

  12 Citations (Scopus)

• Komolgorov scaling from random force fields

  Jensen, M. H., Sneppen, K. & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  2 Citations (Scopus)

• One hub-one process: a tool based view on regulatory network topology

  Axelsen, J. B., Bernhardsson, S. & Sneppen, K., 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

  Research output: Contribution to journal › Journal article › Research › peer-review

  4 Citations (Scopus)

• Oscillations and temporal signalling in cells

  Tiana, G., Krishna, S., Pigolotti, S., Jensen, M. H. & Sneppen, K., 2008, In: Physical Biology. 4, 2, p. R1-R17

  Research output: Contribution to journal › Journal article › Research › peer-review

  100 Citations (Scopus)

• Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

  Mitarai, N., Sneppen, K. & Pedersen, S., 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Codon Usage 100%
  • Ribosomes 75%
  • Messenger RNA 41%
  • Stochastic Processes 18%
  • Protein Biosynthesis 13%
  101 Citations (Scopus)

• Signalling and Feedback in Biological Networks

  Krishna, S., Jensen, M. H. & Sneppen, K., 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

• The cost and capacity of signaling in the Escherichia coli proetin reaction network

  Axelsen, J. B., Krishna, S. & Sneppen, K., 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

  Research output: Contribution to journal › Journal article › Research › peer-review

  5 Citations (Scopus)

• The generation of promoter-mediated transcriptional noise in bacteria

  Mitarai, N., Dodd, I. B., Crooks, M. T. & Sneppen, K., 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

  Research output: Contribution to journal › Journal article › Research › peer-review

  37 Citations (Scopus)

• Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

  Sneppen, K., Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

  Research output: Contribution to journal › Journal article › Research › peer-review

  39 Citations (Scopus)
• 2007

  Combinatorics of feedback in cellular uptake and metabolism of small molecules

  Krishna, S., Semsey, S. & Sneppen, K., 26 Dec 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 52, p. 20815-9 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Homeostasis 100%
  • Sugars 44%
  • Iron 37%
  • History 34%
  • Obesity 31%
  28 Citations (Scopus)

• Combinatorics of feedback in cellular uptake and metabolism of small molecules

  Krishna, S., Semsey, S. & Sneppen, K., 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819

  Research output: Contribution to journal › Conference article › Research › peer-review

  28 Citations (Scopus)

• Efficient degradation and expression prioritization with small RANs

  Mitarai, N., Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, K., 2007, In: Physical Biology. 4, 3, p. 164-171

  Research output: Contribution to journal › Journal article › Research › peer-review

  71 Citations (Scopus)

• Fear and its implications for stock markets

  Simonsen, I., Ahlgren, P. H., Jensen, M. H., Danangelo, R. & Sneppen, K., 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 2, p. 153-158

  Research output: Contribution to journal › Journal article › Research › peer-review

  9 Citations (Scopus)

• Frustration driven stock market dynamics: Leverage effect and asymmetry

  Heden Ahlgren, P. T., Jensen, M. H., Simonsen, I., Donangelo, R. & Sneppen, K., 2007, In: Physica A: Statistical Mechanics and its Applications. 383, 1, p. 1-4 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  18 Citations (Scopus)

• Modeling the two-hybrid detector: Experimental bias on protien interaction networks

  Stibius, KB. & Sneppen, K., 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

  Research output: Contribution to journal › Journal article › Research › peer-review

  4 Citations (Scopus)

• Modelling transcriptional interference and DNA looping in gene regulation

  Dodd, I. B., Shearwin, KB. & Sneppen, K., 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

  Research output: Contribution to journal › Journal article › Research › peer-review

  16 Citations (Scopus)

• Networks and our limited information horizon

  Rosvall, M. & Sneppen, K., 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515

  Research output: Contribution to journal › Journal article › Research › peer-review

  2 Citations (Scopus)

• Signal integration in the galactose network of Escherichia coli

  Semsey, S., Krishna, S., Sneppen, K. & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476

  Research output: Contribution to journal › Journal article › Research › peer-review

  43 Citations (Scopus)

• Spreading out of perturbations in reversible reaction networks

  Maslov, S., Sneppen, K. & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273

  Research output: Contribution to journal › Journal article › Research › peer-review

  17 Citations (Scopus)

• Theoretical analysis of epigenetic cell memory by nucleosome modification

  Dodd, I. B., Micheelsen, M. A., Sneppen, K. & Thon, G., 2007, In: Cell. 129, 4, p. 813-22 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Nucleosomes 100%
  • Epigenomics 74%
  • Modification 47%
  • Histone 18%
  • Spreading 18%
  270 Citations (Scopus)

• UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model

  Krishna, S., Maslov, S. & Sneppen, K., 2007, In: PLoS Computational Biology. 3, 3, p. 451-462

  Research output: Contribution to journal › Journal article › Research › peer-review

  34 Citations (Scopus)
• 2006

  A communication perspective on network topologies

  Sneppen, K. & Rosvall, M., 2006, In: Progress of Theoretical Physics. Supplement. p. 103-118

  Research output: Contribution to journal › Conference article › Research › peer-review

• Degree landscapes in scale-free networks

  Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, K. & Trusina, A., Sept 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

  Research output: Contribution to journal › Journal article › Research › peer-review

  9 Citations (Scopus)

• Functional alignment of regulatory networks: a study of temperate phages

  Trusina, A., Sneppen, K., Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, In: PLoS Computational Biology. 1, 7, p. 599-603

  Research output: Contribution to journal › Journal article › Research › peer-review

  4 Citations (Scopus)

• Genetic regulation of fluxes: iron homeostasis escherichia coli

  Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, M. H., Massé, E. & Sneppen, K., 2006, In: Nucleic Acids Research. 34, 17, p. 4960-4967

  Research output: Contribution to journal › Journal article › Research › peer-review

  53 Citations (Scopus)

• Genetic regulation of fluxes: iron homeostasis of Escherichia coli

  Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, M. H., Massé, E. & Sneppen, K., 2006, In: Nucleic Acids Research. 34, 17, p. 4960-7 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Iron 100%
  • Homeostasis 88%
  • Escherichia coli 84%
  • Trace Elements 13%
  • Metals 9%
  53 Citations (Scopus)

• Longevity of orders in related to the longevity of their constituent genera rather then genus richness

  Bornholdt, S., Sneppen, K. & Westphal, H., 2006, In: Theory in Biosciences. 128, 2, p. 75-83 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  7 Citations (Scopus)

• Minimal model of spiky oscillations in NF-_kB signaling

  Krishna, S., Jensen, M. H. & Sneppen, K., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 4, p. 10840-10845

  Research output: Contribution to journal › Journal article › Research › peer-review

  126 Citations (Scopus)

• Modeling self-organization of communication and topology in social networks

  Rosvall, M. & Sneppen, K., 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 1, p. 016108

  Research output: Contribution to journal › Journal article › Research › peer-review

  17 Citations (Scopus)

• Network models of phage-bacteria coevolution

  Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, K., 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105

  Research output: Contribution to journal › Journal article › Research › peer-review

  9 Citations (Scopus)

• Self-assembly of information in networks

  Rosvall, M. & Sneppen, K., 2006, In: EPL. 74, 6, p. 1109-1115

  Research output: Contribution to journal › Journal article › Research › peer-review

  22 Citations (Scopus)

• Structure and communication in complex networks

  Sneppen, K., 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 1-28

  Research output: Contribution to journal › Conference article › Research › peer-review

• Structure and function of negative feedback loops at the interface of genetic and metabolic networks

  Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, K., 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462

  Research output: Contribution to journal › Journal article › Research › peer-review

  33 Citations (Scopus)

• Structure and function of negative feedback loops at the interface of genetic and metabolic networks

  Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, K., 2006, In: Nucleic Acids Research. 34, 8, p. 2455-62 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Metabolic Networks and Pathways 100%
  • Transcription Factors 37%
  • DNA 27%
  • Protein Biosynthesis 27%
  • Theoretical Models 20%
  33 Citations (Scopus)

• Synchronization model for stock market asymmetry

  Donangelo, R., Jensen, M. H., Simonsen, I. & Sneppen, K., 2006, In: Journal of Statistical Mechanics: Theory and Experiment. L11001, p. 1-8

  Research output: Contribution to journal › Journal article › Research › peer-review

  21 Citations (Scopus)
• 2005

  A Mathematical Model for Transcriptional Interfernce by RNA Polymerase Traffic in Escherichia coli

  Sneppen, K., Dodd, J., Shearwin, K., Palmer, A., Schubert, R., Callen, B. & Egan, B., 2005, In: Journal of Molecular Biology. 346, 2, p. 399-409

  Research output: Contribution to journal › Journal article › Research › peer-review

  69 Citations (Scopus)

• Communication boundaries in networks

  Sneppen, K., Rosvall, M. & Trussina, A., 2005, In: Physical Review Letters. 94, 23, p. 238701

  Research output: Contribution to journal › Journal article › Research › peer-review

  46 Citations (Scopus)

• Computational architecture of the yeast regulatory network: Workshop on Flexibility in Biomolecules, MAY 15-18, 2005 Tempe, AZ

  Maslov, S. & Sneppen, K., 2005, In: Physical Biology. 2, 4, Sp. iss. Sl, p. S94-S100

  Research output: Contribution to journal › Journal article › Research › peer-review

  25 Citations (Scopus)

• Hide-and-seek on complex networks

  Sneppen, K., Trusina, A. & Rosvall, M., Mar 2005, In: EPL. 69, 5, p. 853-859

  Research output: Contribution to journal › Journal article › Research › peer-review

  42 Citations (Scopus)

• Measuring information networks

  Sneppen, K., Trusina, A. & Rosvall, M., Jun 2005, In: Pramana – Journal of Physics. 64, 6, p. 1121-1125

  Research output: Contribution to journal › Journal article › Research › peer-review

  3 Citations (Scopus)

• Navigating netwoks with limited information

  Rosvall, M., Minnhagen, P. & Sneppen, K., 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 6, p. 066111

  Research output: Contribution to journal › Journal article › Research › peer-review

• Need, greed and noise: competing strategies and in a trading model

  Donangelo, R., Hansen, A., Sneppen, K. & Souza, S. R., 2005, In: Physica A: Statistical Mechanics and its Applications. 348, p. 496-504

  Research output: Contribution to journal › Journal article › Research › peer-review

  2 Citations (Scopus)

• Networks and Cities: An Information Perspective

  Rosvall, M., Trusina, A., Minnhagen, P. & Sneppen, K., 2005, In: Physical Review Letters. 94, 2, 028701.

  Research output: Contribution to journal › Journal article › Research › peer-review

  176 Citations (Scopus)

• Oscillating gene expressions in regulatory network: Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology

  Jensen, M. H., Sneppen, K. & Tiana, G., 2005, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. 160, p. 195-202

  Research output: Contribution to journal › Journal article › Research › peer-review

• Physics in Molecular Biology

  Sneppen, K. & Zocchi, G., 2005, UK: Cambridge University Press. 319 p.

  Research output: Book/Report › Book › Research

• Searchability of networks

  Rosvall, M., Grönlund, A., Minnhagen, P. & Sneppen, K., 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, p. 046117

  Research output: Contribution to journal › Journal article › Research

  42 Citations (Scopus)

• Self organized scale-free networks from merging and regeneration

  Kim, B. J., Trusina, A., Minnhagen, P. & Sneppen, K., 2005, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 3, p. 369-372

  Research output: Contribution to journal › Journal article › Research › peer-review

  46 Citations (Scopus)

• Spiky oscillations in NF-KB signalling

  Krishna, S., Jensen, M. H. & Sneppen, K., 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845

  Research output: Contribution to journal › Journal article › Research › peer-review
• 2004

  A simple model for self organization of bipartite networks

  Sneppen, K., Rosvall, M., Trusina, A. & Minnhagen, P., 2004, In: EPL. 67, 3, p. 349-354

  Research output: Contribution to journal › Journal article › Research › peer-review

  18 Citations (Scopus)