Multi-feature-based plaque characterization in ex vivo MRI trained by registration to 3D histology

TY - JOUR

T1 - Multi-feature-based plaque characterization in ex vivo MRI trained by registration to 3D histology

AU - Engelen, Arna van

AU - Niessen, Wiro J.

AU - Klein, Stefan

AU - Groen, Harald C.

AU - Verhagen, Hence J. M.

AU - Wentzel, Jolanda J.

AU - Lugt, Aad van der

AU - de Bruijne, Marleen

PY - 2012/1/7

Y1 - 2012/1/7

N2 - We present a new method for automated characterization of atherosclerotic plaque composition in ex vivo MRI. It uses MRI intensities as well as four other types of features: smoothed, gradient magnitude and Laplacian images at several scales, and the distances to the lumen and outer vessel wall. The ground truth for fibrous, necrotic and calcified tissue was provided by histology and CT in 12 carotid plaque specimens. Semi-automatic registration of a 3D stack of histological slices and CT images to MRI allowed for 3D rotations and in-plane deformations of histology. By basing voxelwise classification on different combinations of features, we evaluated their relative importance. To establish whether training by 3D registration yields different results than training by 2D registration, we determined plaque composition using (1) a 2D slice-based registration approach for three manually selected MRI and histology slices per specimen, and (2) an approach that uses only the three corresponding MRI slices from the 3D-registered volumes. Voxelwise classification accuracy was best when all features were used (73.3 6.3%) and was significantly better than when only original intensities and distance features were used (Friedman, p < 0.05). Although 2D registration or selection of three slices from the 3D set slightly decreased accuracy, these differences were non-significant.

AB - We present a new method for automated characterization of atherosclerotic plaque composition in ex vivo MRI. It uses MRI intensities as well as four other types of features: smoothed, gradient magnitude and Laplacian images at several scales, and the distances to the lumen and outer vessel wall. The ground truth for fibrous, necrotic and calcified tissue was provided by histology and CT in 12 carotid plaque specimens. Semi-automatic registration of a 3D stack of histological slices and CT images to MRI allowed for 3D rotations and in-plane deformations of histology. By basing voxelwise classification on different combinations of features, we evaluated their relative importance. To establish whether training by 3D registration yields different results than training by 2D registration, we determined plaque composition using (1) a 2D slice-based registration approach for three manually selected MRI and histology slices per specimen, and (2) an approach that uses only the three corresponding MRI slices from the 3D-registered volumes. Voxelwise classification accuracy was best when all features were used (73.3 6.3%) and was significantly better than when only original intensities and distance features were used (Friedman, p < 0.05). Although 2D registration or selection of three slices from the 3D set slightly decreased accuracy, these differences were non-significant.

U2 - 10.1088/0031-9155/57/1/241

DO - 10.1088/0031-9155/57/1/241

M3 - Journal article

C2 - 22156050

SN - 0031-9155

VL - 57

SP - 241

EP - 256

JO - Physics in Medicine and Biology

JF - Physics in Medicine and Biology

IS - 1

ER -